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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yejBPutative ABC transporter integral membrane subunit. (366 aa)    
Predicted Functional Partners:
yejE
Putative ABC transporter integral membrane subunit.
  
 0.980
gsiA_6
Putative ABC transporter ATP-binding subunit; Belongs to the ABC transporter superfamily.
 
  
 0.964
appA_2
Putative substrate-binding transport protein.
 
     0.952
gsiD
Putative permease.
     0.538
ddpC_2
Putative permease.
     0.497
ddpC_1
Putative permease.
     0.488
gsiA_1
Putative ABC transporter transporter%2C ATP-binding protein.
 
   
 0.485
dppD_2
Dipeptide transporter ATP-binding protein.
 
   
 0.471
dppC
Dipeptide transporter.
     0.459
ycgG_2
Rtn protein.
       0.444
Your Current Organism:
Yersinia frederiksenii
NCBI taxonomy Id: 29484
Other names: ATCC 33641, CCUG 11293, CIP 80.29, DSM 18490, NCTC 11470, Y. frederiksenii, strain 6175
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.