Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ubiE_2Ubiquinone/menaquinone biosynthesis methyltransferase. (257 aa)    
Predicted Functional Partners:
nikA
Dipeptide transport protein.
 
     0.751
dppB_3
Dipeptide transporter permease DppB.
 
    0.518
oppF_2
Oligopeptide transport ATP-binding protein.
 
     0.514
gsiD
Putative permease.
       0.451
dppD_2
Dipeptide transporter ATP-binding protein.
       0.449
CNG60129.1
Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes.
  
  
 0.418
gsiA_7
Putative transport ATPase.
 
     0.400
Your Current Organism:
Yersinia frederiksenii
NCBI taxonomy Id: 29484
Other names: ATCC 33641, CCUG 11293, CIP 80.29, DSM 18490, NCTC 11470, Y. frederiksenii, strain 6175
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