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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ravARegulatory ATPase RavA; Functions as an ATPase. May play a role in metal insertion (metal-chelatase) or as a chaperone; Belongs to the RavA family. (502 aa)    
Predicted Functional Partners:
viaA
Von Willebrand Factor Type A (VWA) domain-containing protein.
 
  
 0.964
CNG29958.1
Protein of uncharacterised function (DUF1107).
  
     0.656
yijD
Putative inner membrane protein.
  
     0.632
crl
DNA-binding transcriptional regulator Crl; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.543
frsA
Fermentation/respiration switch protein; Belongs to the UPF0255 family.
 
     0.526
yceB
Putative lipoprotein yceB.
  
     0.509
CNG90520.1
Outer membrane lipoprotein YidQ.
  
     0.502
lpp
Major outer membrane lipoprotein.
  
     0.493
bssS
Biofilm formation regulatory protein BssS.
  
     0.481
yfeY
RpoE-regulated lipoprotein.
  
     0.471
Your Current Organism:
Yersinia frederiksenii
NCBI taxonomy Id: 29484
Other names: ATCC 33641, CCUG 11293, CIP 80.29, DSM 18490, NCTC 11470, Y. frederiksenii, strain 6175
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.