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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yscUType III secretion protein%2C YscU/HrpY family. (358 aa)    
Predicted Functional Partners:
CNG74578.1
Type III secretory pathway%2C component EscT.
 
  
 0.990
fliP_3
Type III secretion apparatus protein%2C YscR/HrcR family.
 
  
 0.976
fliQ_3
Type III secretion system protein.
 
  
 0.975
ssaV
Secretion system apparatus protein ssaV.
 
  
 0.945
prgK
Type III secretion system apparatus lipoprotein.
 
  
 0.869
invG
Type III secretion outer membrane pore%2C YscC/HrcC family.
 
  
 0.868
fliN_2
Flagellar motor switch protein FliN.
 
  
 0.850
fliN_1
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
 
  
 0.842
yscN
Type III secretion system ATPase.
 
  
 0.818
fliI_2
Flagellum-specific ATP synthase.
 
  
 0.816
Your Current Organism:
Yersinia frederiksenii
NCBI taxonomy Id: 29484
Other names: ATCC 33641, CCUG 11293, CIP 80.29, DSM 18490, NCTC 11470, Y. frederiksenii, strain 6175
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