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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CNG86509.1Secretion system apparatus protein. (71 aa)    
Predicted Functional Partners:
CNG86485.1
Type III secretion apparatus.
  
  
 0.931
rhaS_2
AraC family transcriptional regulator.
       0.768
prgK
Type III secretion system apparatus lipoprotein.
     
 0.743
CNG86456.1
Putative type III secretion apparatus.
       0.693
CNG86359.1
Type III secretion system protein SsaL.
     
 0.679
CNG86384.1
Type III secretion apparatus protein%2C HrpE/YscL family.
       0.677
CNG86409.1
Uncharacterised protein.
       0.677
CNG86590.1
Secretion system effector protein SseF.
       0.580
CNG86339.1
Type III secretion system protein SsaM.
  
  
 0.577
CNG86563.1
Secretion system effector protein SseF.
       0.575
Your Current Organism:
Yersinia frederiksenii
NCBI taxonomy Id: 29484
Other names: ATCC 33641, CCUG 11293, CIP 80.29, DSM 18490, NCTC 11470, Y. frederiksenii, strain 6175
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.