Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH64_110Prophage CP4-57 regulatory family protein. (72 aa)    
Predicted Functional Partners:
CH64_111
Hypothetical protein.
       0.664
CH64_2788
Bacterial regulatory s, tetR family protein.
  
     0.659
intB_1
Phage integrase family protein; Belongs to the 'phage' integrase family.
 
     0.528
intB
Phage integrase.
 
     0.517
CH64_1838
Phage integrase family protein.
 
     0.508
CH64_3659
Prophage CP4-57 regulatory family protein.
  
     0.498
CH64_109
Hypothetical protein.
       0.490
CH64_112
Hypothetical protein.
       0.484
CH64_753
KTSC domain protein.
  
     0.480
CH64_2089
Glycosyltransferase 9 family protein.
  
     0.427
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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