Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CH64_1737 | cadR | CH64_1737 | CH64_1114 | Hypothetical protein. | Amino acid permease family protein. | 0.430 |
CH64_2008 | cadR | CH64_2008 | CH64_1114 | Hypothetical protein. | Amino acid permease family protein. | 0.430 |
cadC_1 | cadR | CH64_1965 | CH64_1114 | Hypothetical protein; Transcriptional regulatory, C terminal family protein. | Amino acid permease family protein. | 0.430 |
cadC_2 | cadR | CH64_1724 | CH64_1114 | Hypothetical protein; Transcriptional regulatory, C terminal family protein. | Amino acid permease family protein. | 0.460 |
cadR | CH64_1737 | CH64_1114 | CH64_1737 | Amino acid permease family protein. | Hypothetical protein. | 0.430 |
cadR | CH64_2008 | CH64_1114 | CH64_2008 | Amino acid permease family protein. | Hypothetical protein. | 0.430 |
cadR | cadC_1 | CH64_1114 | CH64_1965 | Amino acid permease family protein. | Hypothetical protein; Transcriptional regulatory, C terminal family protein. | 0.430 |
cadR | cadC_2 | CH64_1114 | CH64_1724 | Amino acid permease family protein. | Hypothetical protein; Transcriptional regulatory, C terminal family protein. | 0.460 |
cadR | cmpR_1 | CH64_1114 | CH64_1115 | Amino acid permease family protein. | Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family. | 0.432 |
cadR | puuP | CH64_1114 | CH64_1306 | Amino acid permease family protein. | Amino acid permease family protein. | 0.411 |
cmpR_1 | cadR | CH64_1115 | CH64_1114 | Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family. | Amino acid permease family protein. | 0.432 |
puuP | cadR | CH64_1306 | CH64_1114 | Amino acid permease family protein. | Amino acid permease family protein. | 0.411 |