Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bvgA_1Bacterial regulatory s, luxR family protein. (210 aa)    
Predicted Functional Partners:
bvgS
Hpt domain protein.
 
 
 0.925
CH64_1295
Bacterial regulatory s, luxR family protein.
     
  0.900
barA
HAMP domain protein.
 
 
 
 0.891
evgS
Sensor protein evgS.
  
 
 0.863
uhpB
Histidine kinase family protein.
 
 
 0.709
nreB
Histidine kinase family protein.
 
 
   0.693
narX
Nitrate/nitrite sensor protein narX.
 
 
 0.684
arcB
Sensory box protein.
 
 
 0.639
ompR_2
Response regulator.
  
 
 0.630
cpxR
Transcriptional regulatory protein CpxR.
  
   0.616
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.