Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
nreBHistidine kinase family protein. (518 aa)    
Predicted Functional Partners:
uhpA_2
Bacterial regulatory s, luxR family protein.
 
 
 0.995
uhpA
Transcriptional regulatory protein uhpA.
 
 
 
 0.818
narL
Bacterial regulatory s, luxR family protein.
 
 
   0.744
nreC
Bacterial regulatory s, luxR family protein.
 
 
   0.721
narP
Bacterial regulatory s, luxR family protein.
 
 
   0.717
bvgA_1
Bacterial regulatory s, luxR family protein.
 
 
   0.693
rcsB
rcsB protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions.
 
 
   0.692
uvrY
Response regulator.
 
 
   0.675
evgA-2
Positive transcription regulator evgA.
 
 
   0.670
bvgA_2
Response regulator.
 
 
   0.616
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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