Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
uhpA_2Bacterial regulatory s, luxR family protein. (209 aa)    
Predicted Functional Partners:
nreB
Histidine kinase family protein.
 
 
 0.995
barA
HAMP domain protein.
 
 
 
 0.886
uhpB
Histidine kinase family protein.
 
 
 0.883
evgS
Sensor protein evgS.
  
 
 0.863
narX
Nitrate/nitrite sensor protein narX.
 
 
 0.792
uhpC_2
Major Facilitator Superfamily protein.
     
 0.637
arcB
Sensory box protein.
 
 
 0.618
bvgA_2
Response regulator.
  
     0.589
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
    
   0.532
dosP
GGDEF: diguanylate cyclase domain protein.
 
 
 0.494
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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