Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CH64_175 | CH64_176 | CH64_175 | CH64_176 | 4'-phosphopantetheinyl transferase superfamily protein; Belongs to the P-Pant transferase superfamily. | aspartyl/Asparaginyl beta-hydroxylase family protein. | 0.717 |
CH64_176 | CH64_175 | CH64_176 | CH64_175 | aspartyl/Asparaginyl beta-hydroxylase family protein. | 4'-phosphopantetheinyl transferase superfamily protein; Belongs to the P-Pant transferase superfamily. | 0.717 |
CH64_176 | eptA | CH64_176 | CH64_690 | aspartyl/Asparaginyl beta-hydroxylase family protein. | Hypothetical protein. | 0.919 |
CH64_176 | fimD_1 | CH64_176 | CH64_614 | aspartyl/Asparaginyl beta-hydroxylase family protein. | papC N-terminal domain protein. | 0.576 |
CH64_176 | fimD_2 | CH64_176 | CH64_146 | aspartyl/Asparaginyl beta-hydroxylase family protein. | papC N-terminal domain protein. | 0.574 |
CH64_176 | focC | CH64_176 | CH64_3129 | aspartyl/Asparaginyl beta-hydroxylase family protein. | Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein. | 0.588 |
CH64_176 | htrE_2 | CH64_176 | CH64_3130 | aspartyl/Asparaginyl beta-hydroxylase family protein. | papC N-terminal domain protein. | 0.646 |
CH64_176 | msbB | CH64_176 | CH64_411 | aspartyl/Asparaginyl beta-hydroxylase family protein. | Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Catalyzes the transfer of myristate from myristoyl-acyl carrier protein (ACP) to Kdo(2)-(lauroyl)-lipid IV(A) to form Kdo(2)- lipid A. | 0.914 |
CH64_176 | pagP | CH64_176 | CH64_859 | aspartyl/Asparaginyl beta-hydroxylase family protein. | Antimicrobial peptide resistance and lipid A acylation PagP family protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. | 0.920 |
CH64_176 | yeiU | CH64_176 | CH64_1130 | aspartyl/Asparaginyl beta-hydroxylase family protein. | PAP2 superfamily protein; Involved in the modification of the lipid A domain of lipopolysaccharides (LPS). Transfers a phosphate group from undecaprenyl pyrophosphate (C55-PP) to lipid A to form lipid A 1- diphosphate. Contributes to the recycling of undecaprenyl phosphate (C55-P); Belongs to the LpxT phosphotransferase family. | 0.921 |
CH64_176 | yhjW | CH64_176 | CH64_2488 | aspartyl/Asparaginyl beta-hydroxylase family protein. | Hypothetical protein. | 0.902 |
eptA | CH64_176 | CH64_690 | CH64_176 | Hypothetical protein. | aspartyl/Asparaginyl beta-hydroxylase family protein. | 0.919 |
eptA | msbB | CH64_690 | CH64_411 | Hypothetical protein. | Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Catalyzes the transfer of myristate from myristoyl-acyl carrier protein (ACP) to Kdo(2)-(lauroyl)-lipid IV(A) to form Kdo(2)- lipid A. | 0.913 |
eptA | pagP | CH64_690 | CH64_859 | Hypothetical protein. | Antimicrobial peptide resistance and lipid A acylation PagP family protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. | 0.930 |
eptA | yeiU | CH64_690 | CH64_1130 | Hypothetical protein. | PAP2 superfamily protein; Involved in the modification of the lipid A domain of lipopolysaccharides (LPS). Transfers a phosphate group from undecaprenyl pyrophosphate (C55-PP) to lipid A to form lipid A 1- diphosphate. Contributes to the recycling of undecaprenyl phosphate (C55-P); Belongs to the LpxT phosphotransferase family. | 0.933 |
eptA | yhjW | CH64_690 | CH64_2488 | Hypothetical protein. | Hypothetical protein. | 0.931 |
fimD_1 | CH64_176 | CH64_614 | CH64_176 | papC N-terminal domain protein. | aspartyl/Asparaginyl beta-hydroxylase family protein. | 0.576 |
fimD_1 | focC | CH64_614 | CH64_3129 | papC N-terminal domain protein. | Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein. | 0.899 |
fimD_1 | pagP | CH64_614 | CH64_859 | papC N-terminal domain protein. | Antimicrobial peptide resistance and lipid A acylation PagP family protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. | 0.488 |
fimD_1 | yeiU | CH64_614 | CH64_1130 | papC N-terminal domain protein. | PAP2 superfamily protein; Involved in the modification of the lipid A domain of lipopolysaccharides (LPS). Transfers a phosphate group from undecaprenyl pyrophosphate (C55-PP) to lipid A to form lipid A 1- diphosphate. Contributes to the recycling of undecaprenyl phosphate (C55-P); Belongs to the LpxT phosphotransferase family. | 0.450 |
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