STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bphDSerine hydrolase family protein. (272 aa)    
Predicted Functional Partners:
fabG_3
Short chain dehydrogenase family protein.
 
   0.937
CH64_1871
Cupin family protein.
 
    0.937
todE
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
 
  
 0.920
nirB_2
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
 
 0.914
nadX
Hypothetical protein; Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate.
 
    0.903
gudP
Major Facilitator Superfamily protein.
 
     0.862
kshA
Rieske [2Fe-2S] domain protein.
 
 
 
 0.859
pldh-t
Short chain dehydrogenase family protein.
 
   0.788
apaH
Bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.711
ilvB_2
Thiamine pyrophosphate enzyme, central domain protein; Belongs to the TPP enzyme family.
 
   
 0.707
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.