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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tadA_1Type II/IV secretion system family protein. (428 aa)    
Predicted Functional Partners:
CH64_2016
Type II secretion system (T2SS), F family protein.
 
  
 0.990
tadC
Type II secretion system (T2SS), F family protein.
 
  
 0.990
rcpA
Bacterial type II and III secretion system family protein; Belongs to the bacterial secretin family.
  
 0.979
tadZ
Hypothetical protein.
  
  
 0.925
rcpC
Putative tight adherance operon protein.
  
  
 0.905
tadE
tadE-like family protein.
  
  
 0.899
tadG
Von Willebrand factor type A domain protein.
  
  
 0.840
tadD
TPR repeat family protein.
  
  
 0.828
tadF
Putative tight adherance operon protein.
       0.805
tadV
Type IV leader peptidase family protein.
 
   
 0.785
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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