Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tadDTPR repeat family protein. (251 aa)    
Predicted Functional Partners:
CH64_2016
Type II secretion system (T2SS), F family protein.
  
  
 0.888
rcpA
Bacterial type II and III secretion system family protein; Belongs to the bacterial secretin family.
  
 
 0.881
tadE
tadE-like family protein.
  
  
 0.877
tadF
Putative tight adherance operon protein.
     
 0.875
tadZ
Hypothetical protein.
  
  
 0.869
tadC
Type II secretion system (T2SS), F family protein.
  
  
 0.844
tadA_1
Type II/IV secretion system family protein.
  
  
 0.839
CH64_2013
Hypothetical protein.
       0.773
tadV
Type IV leader peptidase family protein.
     
 0.769
rcpC
Putative tight adherance operon protein.
  
  
 0.763
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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