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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrePSubtilase family protein; Belongs to the peptidase S8 family. (557 aa)    
Predicted Functional Partners:
ureC
Urease_alph: urease, alpha subunit.
      
 0.687
bla
Beta-lactamase OXY-1.
      
 0.660
fepD
fecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
      
 0.548
fepA
tonB-siderophor: TonB-dependent siderophore receptor family protein.
      
 0.547
hha
Hemolysin expression-modulating protein.
      
 0.540
CH64_297
Thiolase, N-terminal domain protein.
  
   
 0.487
qor2_2
Zinc-binding dehydrogenase family protein.
  
   
 0.476
cph2_2
GGDEF: diguanylate cyclase domain protein.
  
     0.456
CH64_3852
Suppressor of fused family protein.
  
     0.431
CH64_605
terB-N family protein.
  
     0.413
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.