STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gadC_1Amino acid permease family protein. (510 aa)    
Predicted Functional Partners:
gadA_1
glu-decarb-GAD: glutamate decarboxylase; Belongs to the group II decarboxylase family.
 
  
 0.949
gadC
Glutamate:gamma-aminobutyrate antiporter; 2A0307_GadC: glutamate:gamma-aminobutyrate antiporter.
  
  
 
0.920
gadA_2
glu-decarb-GAD: glutamate decarboxylase; Belongs to the group II decarboxylase family.
 
  
 0.853
hdeD
Protein hdeD.
  
  
 0.845
glsA-2
Gln_ase: glutaminase A; Belongs to the glutaminase family.
 
  
 0.725
hdeB
Protein hdeB; Required for optimal acid stress protection, which is important for survival of enteric bacteria in the acidic environment of the host stomach. Exhibits a chaperone-like activity at acidic pH by preventing the aggregation of many different periplasmic proteins. Belongs to the HdeB family.
   
  
 0.635
hdeB_1
hdeA/HdeB family protein; Required for optimal acid stress protection, which is important for survival of enteric bacteria in the acidic environment of the host stomach. Exhibits a chaperone-like activity at acidic pH by preventing the aggregation of many different periplasmic proteins. Belongs to the HdeB family.
   
  
 0.635
treC
trehalose_treC: alpha,alpha-phosphotrehalase.
   
  0.563
malS
Alpha amylase, catalytic domain protein.
   
  0.563
amyA
Alpha amylase, catalytic domain protein.
   
  0.563
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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