STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lutR_2Bacterial regulatory s, gntR family protein. (269 aa)    
Predicted Functional Partners:
exuT_2
2A0114: D-galactonate transporter family protein.
 
   
 0.739
nadR
Trifunctional NAD biosynthesis/regulator protein NadR.
   
  
 0.683
kdgR
Pectin degradation repressor protein kdgR.
  
  
 0.501
exuT_1
Sugar (and other) transporter family protein.
  
   
 0.499
exuT_3
Major Facilitator Superfamily protein.
  
   
 0.459
ygjV
Bacterial inner membrane family protein.
  
     0.449
kdgR_2
iclR helix-turn-helix domain protein.
  
  
 0.435
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.