STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
hyfGNickel-dependent hydrogenase family protein. (598 aa)    
Predicted Functional Partners:
hyfI
NADH ubiquinone oxidoreductase, 20 Kd subunit.
 
 
 0.999
hyfF
NADH-Ubiquinone/plastoquinone (complex I), various chains family protein.
 
 
 0.999
hyfC
Hydrogenase-4 component C.
 
 0.999
hyfB
Hydrogenase-4 component B.
 
 
 0.999
hyfE
Hydrogenase-4 component E.
 
  
 0.998
hyfH
4Fe-4S dicluster domain protein.
 
 
 0.997
hyfD
NADH-Ubiquinone/plastoquinone (complex I), various chains family protein.
 
 
 0.990
nuoB
NADH-quinone oxidoreductase subunit B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
 
 0.988
fdhF_1
Fdh-alpha: formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.983
hyfJ
Formate hydrogenlyase maturation HycH family protein.
 
  
 0.975
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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