Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CH64_1748 | CH64_2253 | CH64_1748 | CH64_2253 | Hypothetical protein. | phoPQ-activated pathogenicity-related family protein. | 0.465 |
CH64_2253 | CH64_1748 | CH64_2253 | CH64_1748 | phoPQ-activated pathogenicity-related family protein. | Hypothetical protein. | 0.465 |
CH64_2253 | CH64_2254 | CH64_2253 | CH64_2254 | phoPQ-activated pathogenicity-related family protein. | Hypothetical protein. | 0.557 |
CH64_2253 | CH64_288 | CH64_2253 | CH64_288 | phoPQ-activated pathogenicity-related family protein. | T_den_put_tspse: conserved hypothetical family protein. | 0.415 |
CH64_2253 | CH64_3124 | CH64_2253 | CH64_3124 | phoPQ-activated pathogenicity-related family protein. | impA-related N-terminal family protein. | 0.439 |
CH64_2253 | fimA | CH64_2253 | CH64_612 | phoPQ-activated pathogenicity-related family protein. | Fimbrial family protein. | 0.520 |
CH64_2253 | fimF | CH64_2253 | CH64_616 | phoPQ-activated pathogenicity-related family protein. | Fimbrial family protein. | 0.522 |
CH64_2253 | ftsN | CH64_2253 | CH64_2694 | phoPQ-activated pathogenicity-related family protein. | Cell division protein FtsN; Essential cell division protein that activates septal peptidoglycan synthesis and constriction of the cell. Acts on both sides of the membrane, via interaction with FtsA in the cytoplasm and interaction with the FtsQBL complex in the periplasm. These interactions may induce a conformational switch in both FtsA and FtsQBL, leading to septal peptidoglycan synthesis by FtsI and associated synthases. | 0.469 |
CH64_2253 | holD | CH64_2253 | CH64_3188 | phoPQ-activated pathogenicity-related family protein. | DNA polymerase III subunit psi; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown. | 0.430 |
CH64_2253 | peb1A | CH64_2253 | CH64_2255 | phoPQ-activated pathogenicity-related family protein. | Bacterial extracellular solute-binding s, 3 family protein. | 0.483 |
CH64_2253 | smfA | CH64_2253 | CH64_3392 | phoPQ-activated pathogenicity-related family protein. | Fimbria A protein. | 0.612 |
CH64_2254 | CH64_2253 | CH64_2254 | CH64_2253 | Hypothetical protein. | phoPQ-activated pathogenicity-related family protein. | 0.557 |
CH64_2254 | peb1A | CH64_2254 | CH64_2255 | Hypothetical protein. | Bacterial extracellular solute-binding s, 3 family protein. | 0.661 |
CH64_288 | CH64_2253 | CH64_288 | CH64_2253 | T_den_put_tspse: conserved hypothetical family protein. | phoPQ-activated pathogenicity-related family protein. | 0.415 |
CH64_288 | fimA | CH64_288 | CH64_612 | T_den_put_tspse: conserved hypothetical family protein. | Fimbrial family protein. | 0.480 |
CH64_3124 | CH64_2253 | CH64_3124 | CH64_2253 | impA-related N-terminal family protein. | phoPQ-activated pathogenicity-related family protein. | 0.439 |
fimA | CH64_2253 | CH64_612 | CH64_2253 | Fimbrial family protein. | phoPQ-activated pathogenicity-related family protein. | 0.520 |
fimA | CH64_288 | CH64_612 | CH64_288 | Fimbrial family protein. | T_den_put_tspse: conserved hypothetical family protein. | 0.480 |
fimA | fimF | CH64_612 | CH64_616 | Fimbrial family protein. | Fimbrial family protein. | 0.475 |
fimA | holD | CH64_612 | CH64_3188 | Fimbrial family protein. | DNA polymerase III subunit psi; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown. | 0.516 |
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