Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hyfEHydrogenase-4 component E. (221 aa)    
Predicted Functional Partners:
hyfG
Nickel-dependent hydrogenase family protein.
 
  
 0.998
hyfI
NADH ubiquinone oxidoreductase, 20 Kd subunit.
 
  
 0.987
hyfF
NADH-Ubiquinone/plastoquinone (complex I), various chains family protein.
 
  
 0.980
hyfC
Hydrogenase-4 component C.
 
  
 0.972
hyfD
NADH-Ubiquinone/plastoquinone (complex I), various chains family protein.
 
  
 0.961
hyfB
Hydrogenase-4 component B.
 
  
 0.958
hyfJ
Formate hydrogenlyase maturation HycH family protein.
 
   
 0.949
hycI
hycI: hydrogenase maturation peptidase HycI.
 
   
 0.923
hyfH
4Fe-4S dicluster domain protein.
 
  
 0.921
hyfA
Hydrogenase-4 component A.
 
     0.733
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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