Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yhjH_1EAL domain protein. (262 aa)    
Predicted Functional Partners:
dosP
GGDEF: diguanylate cyclase domain protein.
 
 
 0.888
cph2_1
GGDEF: diguanylate cyclase domain protein.
 
 
 0.834
CH64_1429
GGDEF: diguanylate cyclase domain protein.
 
 
 0.817
gmr
GGDEF: diguanylate cyclase domain protein.
 
 
 0.768
evgS
Sensor protein evgS.
 
  
 0.759
adrA
Putative diguanylate cyclase AdrA.
  
  
 0.759
dosC
GGDEF: diguanylate cyclase domain protein.
 
  
 0.759
flhD
Flagellar transcriptional activator family protein; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family.
    
 
 0.753
ycgG
EAL domain protein.
  
     0.752
yhdA
EAL domain protein.
  
  
 0.736
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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