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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
efeU_1Iron permease FTR1 family protein. (287 aa)    
Predicted Functional Partners:
efeO
Imelysin family protein.
  
 0.998
efeB
Dyp-type peroxidase family protein; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
 
  
 0.984
tpd
Fe2+ transport family protein.
 
  
 0.881
CH64_314
YHS domain protein.
 
  
 0.867
yfuA
yfuA.
   
    0.803
yfeX
Dyp_perox_fam: Dyp-type peroxidase family protein.
  
  
 0.688
macB_4
ABC transporter family protein; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family.
 
  
 0.608
macB_6
ABC transporter family protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
  
 0.607
fepC
ABC transporter family protein.
   
  
 0.606
fhuC
Iron(3+)-hydroxamate import ATP-binding protein FhuC.
   
  
 0.606
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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