Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH64_286Phage integrase family protein. (351 aa)    
Predicted Functional Partners:
CH64_1438
Hypothetical protein.
   
 
 0.848
CH64_1090
Bacteriophage replication protein; Gene A family.
  
    0.665
bssS
bssS family protein.
  
     0.634
CH64_3687
Putative phage terminase small subunit.
  
  
 0.626
ynfB
Hypothetical protein; Belongs to the UPF0482 family.
  
     0.576
dam
Dam: DNA adenine methylase family protein.
  
  
 0.564
intT2
Phage integrase family site-specific recombinase.
  
    0.462
CH64_3140
PAAR motif family protein.
 
    0.445
yfaZ
yfaZ family protein.
  
     0.433
ynfD
Hypothetical protein.
  
     0.425
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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