STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH64_2935Putative type III secretion system apparatus protein. (92 aa)    
Predicted Functional Partners:
CH64_2936
Hypothetical protein.
       0.773
epaO
spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family.
       0.773
ssaV
hrcV: type III secretion, HrcV family protein.
       0.503
yscN
Putative ATP synthase YscN.
       0.503
epaP
yscR: type III secretion apparatus protein, YscR/HrcR family.
       0.470
CH64_2932
Putative type III secretion system apparatus protein.
       0.459
fliQ_2
fliQ_rel_III: type III secretion, HrpO family protein.
       0.432
epaR
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
       0.432
yscU
flhB_rel_III: type III secretion, YscU/HrpY family protein.
       0.432
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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