STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH64_3193Hypothetical protein. (53 aa)    
Predicted Functional Partners:
osmY_3
BON domain protein.
  
  
 0.918
yjbJ
Hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
    0.904
ygdR
Hypothetical protein.
   
    0.839
osmY_2
BON domain protein.
  
    0.831
osmY_1
BON domain protein.
  
    0.767
CH64_3194
Patatin-like phospholipase family protein.
     
 0.690
yiaH
Inner membrane protein YiaH; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.
   
    0.613
kpsM
ABC-2 type transporter family protein.
  
    0.560
ivy
Inhibitor of vertebrate lysozyme family protein.
  
  
 0.550
CH64_3704
Putative membrane protein.
   
    0.509
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.