STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fhuFfe_III_red_FhuF: siderophore-iron reductase FhuF. (255 aa)    
Predicted Functional Partners:
foxA
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
  
 0.853
exbB
exbB: tonB-system energizer ExbB.
   
  
 0.844
tonB
Hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
    0.842
exbD
exbD_1: TonB system transport protein ExbD.
   
  
 0.832
CH64_2715
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
  
    0.816
fhuD
Periplasmic binding family protein.
 
    0.743
fes
Hypothetical protein.
   
  
 0.621
CH64_322
Hypothetical protein; creatinase/Prolidase N-terminal domain protein.
       0.610
fhuB
Iron(3+)-hydroxamate import system permease protein fhuB; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.569
fepA
tonB-siderophor: TonB-dependent siderophore receptor family protein.
  
  
 0.523
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.