STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
viuBSiderophore-interacting FAD-binding domain protein. (278 aa)    
Predicted Functional Partners:
lagD
ABC transporter family protein.
   
   0.717
apxIB_2
type_I_sec_HlyB: type I secretion system ATPase family protein.
   
   0.717
apxIB_1
type_I_sec_HlyB: type I secretion system ATPase family protein.
   
   0.717
hemS
Hemin transport protein hemS.
 
    0.630
hemS-2
Hemin transport protein hemS.
 
    0.570
fecB3
Periplasmic binding family protein.
 
  
 0.557
trpE
trpE_proteo: anthranilate synthase component I.
  
  
 0.521
pabB
pabB: aminodeoxychorismate synthase, component I.
  
  
 0.521
hmuT-2
Hemin-binding periplasmic protein hmuT.
 
    0.491
hmuT
Hemin-binding periplasmic protein hmuT.
 
    0.481
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.