STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
viuBSiderophore-interacting FAD-binding domain protein. (278 aa)    
Predicted Functional Partners:
hemS
Hemin transport protein hemS.
 
    0.694
lagD
ABC transporter family protein.
   
   0.670
apxIB_2
type_I_sec_HlyB: type I secretion system ATPase family protein.
   
   0.670
apxIB_1
type_I_sec_HlyB: type I secretion system ATPase family protein.
   
   0.670
hemS-2
Hemin transport protein hemS.
 
    0.645
trpE
trpE_proteo: anthranilate synthase component I.
  
  
 0.606
pabB
pabB: aminodeoxychorismate synthase, component I.
  
  
 0.606
fecB3
Periplasmic binding family protein.
 
  
 0.549
hmuT-2
Hemin-binding periplasmic protein hmuT.
 
    0.546
yqjI
Transcriptional regulator PadR-like family protein.
 
   
 0.543
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.