STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH64_3323Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein. (1763 aa)    
Predicted Functional Partners:
shlB_1
Hemolysin secretion/activation ShlB/FhaC/HecB family protein.
 
 
 0.786
CH64_3324
Hypothetical protein.
       0.768
shlB_2
Hemolysin secretion/activation ShlB/FhaC/HecB family protein.
 
 
 0.711
shlB_4
Surface antigen family protein.
 
 
 0.701
tesA
GDSL-like Lipase/Acylhydrolase family protein.
   
 
 0.551
CH64_3694
Hypothetical protein.
    
   0.491
htrE_1
papC N-terminal domain protein.
  
  
 0.465
CH64_3325
Hypothetical protein.
       0.417
fliJ-2
Flagellar export protein FliJ; Flagellar protein that affects chemotactic events. Belongs to the FliJ family.
  
     0.408
CH64_1782
Demethylmenaquinone methyltransferase family protein.
  
     0.404
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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