Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cydA_1Bacterial Cytochrome Ubiquinol Oxidase family protein. (483 aa)    
Predicted Functional Partners:
cydB
cydB: cytochrome d ubiquinol oxidase, subunit II.
 0.999
cydB-2
cydB: cytochrome d ubiquinol oxidase, subunit II.
 0.999
ybgT
cyd_oper_ybgT: cyd operon protein YbgT.
  
 0.985
CH64_334
Hypothetical protein.
  
    0.950
cydA
Cytochrome d ubiquinol oxidase subunit 1.
  
  
 
0.917
cydD
cydD: thiol reductant ABC exporter, CydD subunit.
 
  
 0.895
cydC
cydC: thiol reductant ABC exporter, CydC subunit.
 
  
 0.819
CH64_3794
cyd_oper_ybgE: cyd operon protein YbgE.
  
    0.770
narX
Nitrate/nitrite sensor protein narX.
     
 0.644
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
   
 
 0.623
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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