Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yohKInner membrane protein yohK. (231 aa)    
Predicted Functional Partners:
yohJ
lrgA family protein.
 
  
 0.995
CH64_3770
Hypothetical protein.
  
    0.629
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.
 
     0.604
mdtH_2
Major Facilitator Superfamily protein.
       0.547
yhdA
EAL domain protein.
      
 0.482
CH64_2089
Glycosyltransferase 9 family protein.
   
    0.444
rfaQ_1
Glycosyltransferase 9 family protein.
   
    0.444
waaC
heptsyl_trn_I: lipopolysaccharide heptosyltransferase I.
   
    0.444
waaF
heptsyl_trn_II: lipopolysaccharide heptosyltransferase II.
   
    0.444
rfaQ
heptsyl_trn_III: putative lipopolysaccharide heptosyltransferase III.
   
    0.444
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.