Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ahpCHypothetical protein; C-terminal domain of 1-Cys peroxiredoxin family protein. (200 aa)    
Predicted Functional Partners:
CH64_2717
Hybrid peroxiredoxin hyPrx5.
  
 0.970
trxB
TRX_reduct: thioredoxin-disulfide reductase.
  
 
 0.921
fur
Ferric uptake regulation protein; Belongs to the Fur family.
  
  
 0.842
sodC
Superoxide dismutase Cu-Zn; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
 
 0.830
resA_2
Redoxin family protein.
  
 0.796
dsbE
Thiol:disulfide interchange protein DsbE.
  
 0.796
resA_1
ahpC/TSA family protein.
  
 0.796
dsbE-2
Thiol:disulfide interchange protein DsbE.
  
 0.796
ftnA
Ferritin-like domain protein; Iron-storage protein.
  
  
 0.759
zur
Ferric uptake regulator family protein; Belongs to the Fur family.
  
  
 0.756
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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