rpmE-2 protein (Yersinia rohdei) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

rpmE-2

L31: ribosomal protein L31. (86 aa)

Predicted Functional Partners:

rpmJ-2

0.993

rpmB

0.984

rpmG

0.971

rplU

0.970

rpsP

0.970

rplM

0.969

rpmA

0.969

rpsT

0.969

rplS

0.969

rplT

0.969

Your Current Organism:

Yersinia rohdei

NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rplS	CH64_2176	CH64_3461	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.994
rplM	rplT	CH64_2176	CH64_748	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.997
rplM	rplU	CH64_2176	CH64_3046	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.993
rplM	rpmA	CH64_2176	CH64_3047	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	L27: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.996
rplM	rpmB	CH64_2176	CH64_2651	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	L28: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.992
rplM	rpmE-2	CH64_2176	CH64_3604	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	L31: ribosomal protein L31.	0.969
rplM	rpmG	CH64_2176	CH64_2652	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	rpmG_bact: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.993
rplM	rpmJ-2	CH64_2176	CH64_3603	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	rpmJ_bact: ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.970
rplM	rpsP	CH64_2176	CH64_3458	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	S16: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.993
rplM	rpsT	CH64_2176	CH64_3235	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.993
rplS	rplM	CH64_3461	CH64_2176	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.994
rplS	rplT	CH64_3461	CH64_748	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.995
rplS	rplU	CH64_3461	CH64_3046	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.996
rplS	rpmA	CH64_3461	CH64_3047	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	L27: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.997
rplS	rpmB	CH64_3461	CH64_2651	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	L28: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.993
rplS	rpmE-2	CH64_3461	CH64_3604	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	L31: ribosomal protein L31.	0.969
rplS	rpmG	CH64_3461	CH64_2652	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	rpmG_bact: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.991
rplS	rpmJ-2	CH64_3461	CH64_3603	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	rpmJ_bact: ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.965
rplS	rpsP	CH64_3461	CH64_3458	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	S16: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.997
rplS	rpsT	CH64_3461	CH64_3235	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.991