Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gadCGlutamate:gamma-aminobutyrate antiporter; 2A0307_GadC: glutamate:gamma-aminobutyrate antiporter. (512 aa)    
Predicted Functional Partners:
gadA_2
glu-decarb-GAD: glutamate decarboxylase; Belongs to the group II decarboxylase family.
 
  
 0.941
gadC_1
Amino acid permease family protein.
  
  
 
0.920
hdeD
Protein hdeD.
  
  
 0.903
gadA_1
glu-decarb-GAD: glutamate decarboxylase; Belongs to the group II decarboxylase family.
 
  
 0.885
hdeB
Protein hdeB; Required for optimal acid stress protection, which is important for survival of enteric bacteria in the acidic environment of the host stomach. Exhibits a chaperone-like activity at acidic pH by preventing the aggregation of many different periplasmic proteins. Belongs to the HdeB family.
   
  
 0.740
hdeB_1
hdeA/HdeB family protein; Required for optimal acid stress protection, which is important for survival of enteric bacteria in the acidic environment of the host stomach. Exhibits a chaperone-like activity at acidic pH by preventing the aggregation of many different periplasmic proteins. Belongs to the HdeB family.
   
  
 0.740
sapB_2
mgtC family protein.
   
    0.708
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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