STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH64_366Hypothetical protein. (90 aa)    
Predicted Functional Partners:
CH64_278
Hypothetical protein.
  
     0.768
CH64_1137
yejG-like family protein.
  
     0.760
ydgH
Protein ydgH.
  
     0.754
cspD
cspD: cold shock domain protein CspD.
   
    0.750
yhhK
Hypothetical protein; Controls both the activation and catalytic activity of PanD in a coenzyme A (CoA)-dependent fashion; Belongs to the PanZ/PanM family.
  
     0.744
CH64_3794
cyd_oper_ybgE: cyd operon protein YbgE.
  
     0.743
CH64_2982
Hypothetical protein.
  
     0.734
tomB
Biofilm formation regulator YbaJ family protein.
  
     0.734
CH64_2541
Hypothetical protein.
  
     0.729
ycfL
Hypothetical protein.
  
     0.729
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.