Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ascF | chb | CH64_1292 | CH64_3752 | EIIB_glc: PTS system, glucose-like IIB component domain protein. | Chitobiase. | 0.917 |
ascF | murP | CH64_1292 | CH64_2122 | EIIB_glc: PTS system, glucose-like IIB component domain protein. | Phosphotransferase system, EIIB family protein. | 0.453 |
ascF | nagE | CH64_1292 | CH64_3748 | EIIB_glc: PTS system, glucose-like IIB component domain protein. | PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component. | 0.925 |
ascF | nagK | CH64_1292 | CH64_909 | EIIB_glc: PTS system, glucose-like IIB component domain protein. | Glucokinase family protein; Catalyzes the phosphorylation of N-acetyl-D-glucosamine (GlcNAc) derived from cell-wall degradation, yielding GlcNAc-6-P. | 0.828 |
ascF | treP | CH64_1292 | CH64_2204 | EIIB_glc: PTS system, glucose-like IIB component domain protein. | PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component. | 0.440 |
bglF | chb | CH64_1148 | CH64_3752 | EIIB_glc: PTS system, glucose-like IIB component domain protein. | Chitobiase. | 0.917 |
bglF | murP | CH64_1148 | CH64_2122 | EIIB_glc: PTS system, glucose-like IIB component domain protein. | Phosphotransferase system, EIIB family protein. | 0.456 |
bglF | nagE | CH64_1148 | CH64_3748 | EIIB_glc: PTS system, glucose-like IIB component domain protein. | PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component. | 0.913 |
bglF | nagK | CH64_1148 | CH64_909 | EIIB_glc: PTS system, glucose-like IIB component domain protein. | Glucokinase family protein; Catalyzes the phosphorylation of N-acetyl-D-glucosamine (GlcNAc) derived from cell-wall degradation, yielding GlcNAc-6-P. | 0.828 |
bglF | treP | CH64_1148 | CH64_2204 | EIIB_glc: PTS system, glucose-like IIB component domain protein. | PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component. | 0.440 |
chb | ascF | CH64_3752 | CH64_1292 | Chitobiase. | EIIB_glc: PTS system, glucose-like IIB component domain protein. | 0.917 |
chb | bglF | CH64_3752 | CH64_1148 | Chitobiase. | EIIB_glc: PTS system, glucose-like IIB component domain protein. | 0.917 |
chb | malX | CH64_3752 | CH64_557 | Chitobiase. | pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component domain protein. | 0.917 |
chb | murP | CH64_3752 | CH64_2122 | Chitobiase. | Phosphotransferase system, EIIB family protein. | 0.917 |
chb | nagE | CH64_3752 | CH64_3748 | Chitobiase. | PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component. | 0.964 |
chb | nagK | CH64_3752 | CH64_909 | Chitobiase. | Glucokinase family protein; Catalyzes the phosphorylation of N-acetyl-D-glucosamine (GlcNAc) derived from cell-wall degradation, yielding GlcNAc-6-P. | 0.908 |
chb | nagZ | CH64_3752 | CH64_917 | Chitobiase. | Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. | 0.924 |
chb | ptsG | CH64_3752 | CH64_924 | Chitobiase. | PTS system glucose-specific EIICB component. | 0.928 |
chb | treP | CH64_3752 | CH64_2204 | Chitobiase. | PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component. | 0.917 |
chb | ybbD | CH64_3752 | CH64_2573 | Chitobiase. | Hypothetical protein; Glycosyl hydrolase family 3 N terminal domain protein. | 0.924 |
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