Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CH64_3029 | CH64_3574 | CH64_3029 | CH64_3574 | Hypothetical protein. | Hypothetical protein. | 0.708 |
CH64_3029 | cyaA | CH64_3029 | CH64_2779 | Hypothetical protein. | Adenylate cyclase, class-I family protein; Belongs to the adenylyl cyclase class-1 family. | 0.729 |
CH64_3029 | dapX | CH64_3029 | CH64_1407 | Hypothetical protein. | nlpB/DapX lipofamily protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.655 |
CH64_3029 | lptC | CH64_3029 | CH64_2191 | Hypothetical protein. | LPS export ABC transporter periplasmic protein LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family. | 0.644 |
CH64_3029 | rseA | CH64_3029 | CH64_1517 | Hypothetical protein. | sigma-E factor negative regulatory protein; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic p [...] | 0.421 |
CH64_3029 | seqA | CH64_3029 | CH64_3759 | Hypothetical protein. | Protein seqA; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated. | 0.617 |
CH64_3029 | yciS | CH64_3029 | CH64_518 | Hypothetical protein. | Inner membrane protein yciS; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family. | 0.725 |
CH64_3029 | yejL | CH64_3029 | CH64_1144 | Hypothetical protein. | Hypothetical protein; Belongs to the UPF0352 family. | 0.582 |
CH64_3574 | CH64_3029 | CH64_3574 | CH64_3029 | Hypothetical protein. | Hypothetical protein. | 0.708 |
CH64_3574 | cyaA | CH64_3574 | CH64_2779 | Hypothetical protein. | Adenylate cyclase, class-I family protein; Belongs to the adenylyl cyclase class-1 family. | 0.681 |
CH64_3574 | dapX | CH64_3574 | CH64_1407 | Hypothetical protein. | nlpB/DapX lipofamily protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.725 |
CH64_3574 | lptC | CH64_3574 | CH64_2191 | Hypothetical protein. | LPS export ABC transporter periplasmic protein LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family. | 0.728 |
CH64_3574 | rseA | CH64_3574 | CH64_1517 | Hypothetical protein. | sigma-E factor negative regulatory protein; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic p [...] | 0.707 |
CH64_3574 | seqA | CH64_3574 | CH64_3759 | Hypothetical protein. | Protein seqA; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated. | 0.489 |
CH64_3574 | yciS | CH64_3574 | CH64_518 | Hypothetical protein. | Inner membrane protein yciS; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family. | 0.745 |
CH64_3574 | yejL | CH64_3574 | CH64_1144 | Hypothetical protein. | Hypothetical protein; Belongs to the UPF0352 family. | 0.511 |
cyaA | CH64_3029 | CH64_2779 | CH64_3029 | Adenylate cyclase, class-I family protein; Belongs to the adenylyl cyclase class-1 family. | Hypothetical protein. | 0.729 |
cyaA | CH64_3574 | CH64_2779 | CH64_3574 | Adenylate cyclase, class-I family protein; Belongs to the adenylyl cyclase class-1 family. | Hypothetical protein. | 0.681 |
cyaA | lptC | CH64_2779 | CH64_2191 | Adenylate cyclase, class-I family protein; Belongs to the adenylyl cyclase class-1 family. | LPS export ABC transporter periplasmic protein LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family. | 0.546 |
cyaA | rseA | CH64_2779 | CH64_1517 | Adenylate cyclase, class-I family protein; Belongs to the adenylyl cyclase class-1 family. | sigma-E factor negative regulatory protein; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic p [...] | 0.619 |
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