Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
CH64_52ubiE/COQ5 methyltransferase family protein. (375 aa)    
Predicted Functional Partners:
kpsM
ABC-2 type transporter family protein.
 
   
 0.880
tagH
ABC transporter family protein.
 
     0.871
CH64_53
Glycosyl transferases group 1 family protein.
     0.852
mshA_3
Glycosyl transferases group 1 family protein.
 
     0.757
CH64_57
Glycosyl transferases group 1 family protein.
 
     0.674
ubiB
2-polyprenylphenol 6-hydroxylase; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.
   
 
 0.648
algC
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein.
 
 
   0.648
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
   
 0.613
gmd_2
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
   
 0.601
manC1
GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
       0.565
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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