STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimC_1Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein. (229 aa)    
Predicted Functional Partners:
fimD_1
papC N-terminal domain protein.
 
 
 0.963
fimA
Fimbrial family protein.
 
 
 0.927
fimD_2
papC N-terminal domain protein.
 
 
 0.913
htrE_1
papC N-terminal domain protein.
 
 
 0.913
fimD_3
papC N-terminal domain protein.
 
 
 0.913
htrE_2
papC N-terminal domain protein.
 
 
 0.913
mrfC
papC N-terminal domain protein.
 
 
 0.911
sfaA_2
Putative fimbrial protein.
 
 
 0.895
fimF
Fimbrial family protein.
 
   0.854
smfA
Fimbria A protein.
 
   0.807
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
Server load: medium (68%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.