Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
arcB | baeR | CH64_2168 | CH64_1437 | Sensory box protein. | Response regulator. | 0.893 |
arcB | barA | CH64_2168 | CH64_3359 | Sensory box protein. | HAMP domain protein. | 0.999 |
arcB | basR_2 | CH64_2168 | CH64_3051 | Sensory box protein. | Hypothetical protein; Transcriptional regulatory, C terminal family protein. | 0.875 |
arcB | cpxR | CH64_2168 | CH64_2673 | Sensory box protein. | Transcriptional regulatory protein CpxR. | 0.884 |
arcB | evgS | CH64_2168 | CH64_3148 | Sensory box protein. | Sensor protein evgS. | 0.999 |
arcB | phoB | CH64_2168 | CH64_3536 | Sensory box protein. | phoB: phosphate regulon transcriptional regulatory protein PhoB. | 0.896 |
arcB | phoP | CH64_2168 | CH64_904 | Sensory box protein. | Transcriptional regulatory protein phoP. | 0.900 |
arcB | rcsD | CH64_2168 | CH64_1160 | Sensory box protein. | Hpt domain protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB. | 0.994 |
arcB | rstA | CH64_2168 | CH64_627 | Sensory box protein. | Response regulator. | 0.884 |
arcB | rstB | CH64_2168 | CH64_628 | Sensory box protein. | HAMP domain protein. | 0.933 |
baeR | arcB | CH64_1437 | CH64_2168 | Response regulator. | Sensory box protein. | 0.893 |
baeR | barA | CH64_1437 | CH64_3359 | Response regulator. | HAMP domain protein. | 0.880 |
baeR | evgS | CH64_1437 | CH64_3148 | Response regulator. | Sensor protein evgS. | 0.898 |
baeR | rcsD | CH64_1437 | CH64_1160 | Response regulator. | Hpt domain protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB. | 0.781 |
baeR | rstB | CH64_1437 | CH64_628 | Response regulator. | HAMP domain protein. | 0.816 |
barA | arcB | CH64_3359 | CH64_2168 | HAMP domain protein. | Sensory box protein. | 0.999 |
barA | baeR | CH64_3359 | CH64_1437 | HAMP domain protein. | Response regulator. | 0.880 |
barA | basR_2 | CH64_3359 | CH64_3051 | HAMP domain protein. | Hypothetical protein; Transcriptional regulatory, C terminal family protein. | 0.898 |
barA | cpxR | CH64_3359 | CH64_2673 | HAMP domain protein. | Transcriptional regulatory protein CpxR. | 0.884 |
barA | evgS | CH64_3359 | CH64_3148 | HAMP domain protein. | Sensor protein evgS. | 0.999 |
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