Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH64_656Hypothetical protein. (148 aa)    
Predicted Functional Partners:
CH64_657
RES domain protein.
 
 
 0.997
fhaB_1
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein.
  
     0.568
CH64_605
terB-N family protein.
  
     0.536
rcsA_1
Bacterial regulatory s, luxR family protein.
  
     0.509
shlA_3
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein.
  
     0.492
abgR
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
  
     0.442
CH64_2397
Putative ATPases of the HSP70 class involved in cell division.
  
     0.437
ttgA
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.420
rcsB_1
Bacterial regulatory s, luxR family protein.
  
     0.417
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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