Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ycjFHypothetical protein. (354 aa)    
Predicted Functional Partners:
ycjX
Hypothetical protein.
 
  
 0.996
CH64_660
Phage shock PspD family protein.
     
 0.878
CH64_3202
Bacterial virulence factor hemolysin family protein.
  
     0.716
pspC
phageshock_pspC: phage shock protein C.
 
   
 0.687
glrK
HAMP domain protein.
  
     0.684
yhcB
Hypothetical protein.
  
     0.648
pspB
phageshock_pspB: phage shock protein B.
     
 0.645
mepA
Penicillin-insensitive murein endopeptidase family protein; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus.
  
     0.586
CH64_2632
asmA family protein.
  
     0.581
ybbN
Putative thioredoxin protein.
   
    0.573
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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