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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lgrD3-beta hydroxysteroid dehydrogenase/isomerase family protein. (369 aa)    
Predicted Functional Partners:
CH64_297
Thiolase, N-terminal domain protein.
 
  
 0.930
qor2_2
Zinc-binding dehydrogenase family protein.
  
  
 0.920
CH64_3663
Hypothetical protein; gtr1/RagA G conserved region family protein.
  
     0.648
CH64_1550
Dynamin family protein.
  
     0.643
CH64_2079
Dynamin family protein.
  
     0.618
CH64_2089
Glycosyltransferase 9 family protein.
  
     0.568
lamB_2
lamB porin family protein.
  
     0.549
CH64_3667
Antirestriction family protein.
  
     0.525
efe
2OG-Fe(II) oxygenase superfamily protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.489
gyrI
gyrI-like small molecule binding domain protein; Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell.
  
     0.488
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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