Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yeeAFusaric acid resistance family protein. (352 aa)    
Predicted Functional Partners:
CH64_1596
Hypothetical protein.
  
     0.744
ampE
Protein AmpE.
  
     0.736
yccS_2
YCCS_YHJK: integral membrane, YccS/YhfK family protein.
  
     0.717
aaeX
Hypothetical protein.
 
  
 0.716
tsgA
Major Facilitator Superfamily protein.
  
     0.699
yceB
Hypothetical protein.
  
     0.668
bssS
bssS family protein.
  
     0.668
CH64_1057
Hypothetical protein.
  
     0.661
CH64_1401
Hypothetical protein.
  
     0.642
ydjM
Inner membrane protein ydjM.
  
   
 0.638
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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