Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yesOBacterial extracellular solute-binding family protein. (429 aa)    
Predicted Functional Partners:
togN
Binding--dependent transport system inner membrane component family protein.
 
 0.999
ycjO
Binding--dependent transport system inner membrane component family protein.
 
 0.997
ugpC_1
ABC transporter family protein; Belongs to the ABC transporter superfamily.
 
 0.994
ugpE
Binding--dependent transport system inner membrane component family protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
 
 0.936
ycjP
Binding--dependent transport system inner membrane component family protein.
 
 
 0.935
ugpA_1
Binding--dependent transport system inner membrane component family protein.
 
 
 0.930
ugpA_2
Binding--dependent transport system inner membrane component family protein.
 
 
 0.901
malF
Binding--dependent transport system inner membrane component family protein.
 
 
 0.880
ugpC_2
ABC transporter family protein; Belongs to the ABC transporter superfamily.
 
 
 0.877
ugpC_3
ABC transporter family protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
 
 
 0.875
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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