Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
iclR_1iclR helix-turn-helix domain protein. (260 aa)    
Predicted Functional Partners:
kdgR_2
iclR helix-turn-helix domain protein.
  
     0.774
kipI
Allophanate hydrolase subunit 1 family protein.
  
    0.730
CH64_3776
Hypothetical protein.
  
    0.721
nadR
Trifunctional NAD biosynthesis/regulator protein NadR.
   
  
 0.550
ybgL
Hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
    0.515
dapA_1
Dihydrodipicolinate synthetase family protein; Belongs to the DapA family.
  
  
 0.507
uxuR
Bacterial regulatory s, gntR family protein.
  
  
 0.467
uxaA_1
Hypothetical protein; D-galactarate dehydratase / Altronate hydrolase, C terminus family protein.
 
    0.462
yfaV
Major Facilitator Superfamily protein.
       0.409
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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