Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CH64_896O-Antigen ligase family protein. (407 aa)    
Predicted Functional Partners:
waaF
heptsyl_trn_II: lipopolysaccharide heptosyltransferase II.
 
 
 0.934
rfaQ
heptsyl_trn_III: putative lipopolysaccharide heptosyltransferase III.
 
 
 0.925
waaC
heptsyl_trn_I: lipopolysaccharide heptosyltransferase I.
 
 
 0.923
waaA
Glycosyl transferases group 1 family protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.913
wcaJ
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.843
CH64_605
terB-N family protein.
  
     0.669
rcsB_1
Bacterial regulatory s, luxR family protein.
  
    0.639
rcsA_1
Bacterial regulatory s, luxR family protein.
  
    0.593
fhaB_1
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein.
  
     0.587
ywqD
Chain length determinant family protein.
  
  
 0.561
Your Current Organism:
Yersinia rohdei
NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78
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