ymfC protein (Yersinia rohdei) - STRING interaction network

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Score

ymfC

Pseudouridine synthase family protein; Belongs to the pseudouridine synthase RsuA family. (208 aa)

Predicted Functional Partners:

nudJ

0.820

xth

0.785

cmk

0.721

engA

0.721

rlmL

0.657

icd

0.598

trmU

0.567

hflD

0.478

purB

0.449

rluB

0.412

Your Current Organism:

Yersinia rohdei

NCBI taxonomy Id: 29485
Other names: ATCC 43380, CCUG 38833, CDC 3022-85, CIP 103163, JCM 7376, LMG 8454, LMG:8454, Y. rohdei, strain H271-36/78

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cmk	engA	CH64_1032	CH64_1458	Cmk: cytidylate kinase.	Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	0.993
cmk	rluB	CH64_1032	CH64_504	Cmk: cytidylate kinase.	Pseudouridine synthase family protein; Belongs to the pseudouridine synthase RsuA family.	0.797
cmk	ymfC	CH64_1032	CH64_899	Cmk: cytidylate kinase.	Pseudouridine synthase family protein; Belongs to the pseudouridine synthase RsuA family.	0.721
engA	cmk	CH64_1458	CH64_1032	Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	Cmk: cytidylate kinase.	0.993
engA	rlmL	CH64_1458	CH64_1003	Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	THUMP domain protein; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.	0.451
engA	rluB	CH64_1458	CH64_504	Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	Pseudouridine synthase family protein; Belongs to the pseudouridine synthase RsuA family.	0.857
engA	ymfC	CH64_1458	CH64_899	Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	Pseudouridine synthase family protein; Belongs to the pseudouridine synthase RsuA family.	0.721
hflD	nudJ	CH64_902	CH64_900	High frequency lysogenization protein hflD.	Phosphatase nudJ; Belongs to the Nudix hydrolase family. NudJ subfamily.	0.478
hflD	purB	CH64_902	CH64_903	High frequency lysogenization protein hflD.	purB: adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	0.782
hflD	trmU	CH64_902	CH64_901	High frequency lysogenization protein hflD.	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln), leading to the formation of s(2)U34, the first step of tRNA-mnm(5)s(2)U34 synthesis. Sulfur is provided by IscS, via a sulfur-relay system. Binds ATP and its substrate tRNAs; Belongs to the MnmA/TRMU family.	0.944
hflD	ymfC	CH64_902	CH64_899	High frequency lysogenization protein hflD.	Pseudouridine synthase family protein; Belongs to the pseudouridine synthase RsuA family.	0.478
icd	nudJ	CH64_898	CH64_900	Prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent.	Phosphatase nudJ; Belongs to the Nudix hydrolase family. NudJ subfamily.	0.598
icd	purB	CH64_898	CH64_903	Prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent.	purB: adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	0.870
icd	trmU	CH64_898	CH64_901	Prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent.	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln), leading to the formation of s(2)U34, the first step of tRNA-mnm(5)s(2)U34 synthesis. Sulfur is provided by IscS, via a sulfur-relay system. Binds ATP and its substrate tRNAs; Belongs to the MnmA/TRMU family.	0.431
icd	ymfC	CH64_898	CH64_899	Prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent.	Pseudouridine synthase family protein; Belongs to the pseudouridine synthase RsuA family.	0.598
nudJ	hflD	CH64_900	CH64_902	Phosphatase nudJ; Belongs to the Nudix hydrolase family. NudJ subfamily.	High frequency lysogenization protein hflD.	0.478
nudJ	icd	CH64_900	CH64_898	Phosphatase nudJ; Belongs to the Nudix hydrolase family. NudJ subfamily.	Prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent.	0.598
nudJ	purB	CH64_900	CH64_903	Phosphatase nudJ; Belongs to the Nudix hydrolase family. NudJ subfamily.	purB: adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	0.449
nudJ	trmU	CH64_900	CH64_901	Phosphatase nudJ; Belongs to the Nudix hydrolase family. NudJ subfamily.	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln), leading to the formation of s(2)U34, the first step of tRNA-mnm(5)s(2)U34 synthesis. Sulfur is provided by IscS, via a sulfur-relay system. Binds ATP and its substrate tRNAs; Belongs to the MnmA/TRMU family.	0.537
nudJ	ymfC	CH64_900	CH64_899	Phosphatase nudJ; Belongs to the Nudix hydrolase family. NudJ subfamily.	Pseudouridine synthase family protein; Belongs to the pseudouridine synthase RsuA family.	0.820