STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
p1Serine 3-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)    
Predicted Functional Partners:
inh
Alkaline proteinase inhibitor; Inhibitor of the alkaline protease.
  
 
 0.959
pD
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.880
pE
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.873
cirA
YiuR; outer membrane siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.840
hasD_2
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.840
hxuC_2
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.840
AKA38893.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.840
AKA39684.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.840
AKA37708.1
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.792
yhlA
Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.791
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.