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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shlA_1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1464 aa)    
Predicted Functional Partners:
shlB_1
Hemolysin activation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.964
yhlB
Hemolysin activation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.858
estP
Autotransporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.756
AKA37708.1
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.714
shlB_3
Hemolysin activator/exporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.698
tesA
acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.696
AKA37712.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.613
bcsC
Cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.596
AKA40005.1
Chondroitin lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.586
AKA39669.1
CAAX protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.539
Your Current Organism:
Yersinia ruckeri
NCBI taxonomy Id: 29486
Other names: ATCC 29473, CCM 6093, CCUG 14190, CDC 2396-61, CIP 82.80, DSM 18506, JCM 15110, JCM 2429, NCIB 2194, NCIMB 2194, NCTC 12986, Y. ruckeri
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