Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| emrE2 | fabF | UGYR_01055 | UGYR_00285 | Multidrug transporter; Catalyzes the excretion of spermidine. | 3-oxoacyl-ACP synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.445 |
| emrE2 | infA | UGYR_01055 | UGYR_16400 | Multidrug transporter; Catalyzes the excretion of spermidine. | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.499 |
| emrE2 | mdtJ | UGYR_01055 | UGYR_01050 | Multidrug transporter; Catalyzes the excretion of spermidine. | Spermidine export protein MdtJ; Catalyzes the excretion of spermidine. | 0.991 |
| emrE2 | srmB1 | UGYR_01055 | UGYR_15800 | Multidrug transporter; Catalyzes the excretion of spermidine. | ATP-dependent RNA helicase RhlE; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. | 0.533 |
| emrE2 | sugE | UGYR_01055 | UGYR_11655 | Multidrug transporter; Catalyzes the excretion of spermidine. | Multidrug transporter; Member of the SMR family of proton-dependent drug efflux transporters; quaternary ammonium compound efflux pump; confers resistance to cetylpyridinium, cetyldimethylethyl ammonium and cetrimide cations; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.611 |
| fabF | emrE2 | UGYR_00285 | UGYR_01055 | 3-oxoacyl-ACP synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | Multidrug transporter; Catalyzes the excretion of spermidine. | 0.445 |
| infA | emrE2 | UGYR_16400 | UGYR_01055 | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | Multidrug transporter; Catalyzes the excretion of spermidine. | 0.499 |
| infA | srmB1 | UGYR_16400 | UGYR_15800 | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | ATP-dependent RNA helicase RhlE; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. | 0.434 |
| mdtJ | emrE2 | UGYR_01050 | UGYR_01055 | Spermidine export protein MdtJ; Catalyzes the excretion of spermidine. | Multidrug transporter; Catalyzes the excretion of spermidine. | 0.991 |
| srmB1 | emrE2 | UGYR_15800 | UGYR_01055 | ATP-dependent RNA helicase RhlE; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. | Multidrug transporter; Catalyzes the excretion of spermidine. | 0.533 |
| srmB1 | infA | UGYR_15800 | UGYR_16400 | ATP-dependent RNA helicase RhlE; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.434 |
| sugE | emrE2 | UGYR_11655 | UGYR_01055 | Multidrug transporter; Member of the SMR family of proton-dependent drug efflux transporters; quaternary ammonium compound efflux pump; confers resistance to cetylpyridinium, cetyldimethylethyl ammonium and cetrimide cations; Derived by automated computational analysis using gene prediction method: Protein Homology. | Multidrug transporter; Catalyzes the excretion of spermidine. | 0.611 |